Full list can be found at Google Scholar.

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• Single cell analysis of blood mononuclear cells stimulated through either LPS or anti-CD3 and anti-CD28 Frontiers in Immunology. 2021.

• The lethal sex gap: COVID-19. Immunity & Ageing. 2020.

• V-SVA: an R Shiny application for detecting and annotating hidden sources of variation in single-cell RNA-seq data. Bioinformatics. 2020.

• Sestrins induce natural killer function in senescent-like CD8+ T cells. Nature Immunology. 2020.

• Sexual-dimorphism in human immune system aging. Nature Communications. 2020.

• BiFET: sequencing Bias-free transcription factor Footprint Enrichment Test. Nucleic Acids Research. 2019.

• Multiomic Profiling Identifies cis-Regulatory Networks Underlying Human Pancreatic β Cell Identity and Function. Cell Reports. 2019.

• Detection of correlated hidden factors from single cell transcriptomes using Iteratively Adjusted-SVA (IA-SVA). Scientific Reports. 2018.​​​

• A neural network based model effectively predicts enhancers from clinical ATAC-seq samples. Scientific Reports. 2018.

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• Type 2 Diabetes Associated Genetic Variants Regulate Chromatin Accessibility in Human Islets. Diabetes. 2018.

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• A common Type 2 Diabetes Risk Variant Potentiates Activity of an Evolutionarily Conserved Islet Stretch Enhancer and Increases C2CD4A and C2CD4B expression. AJHG 2018.

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• I-ATAC: interactive pipeline for the management and pre-processing of ATAC-seq samples. PeerJ 2018.

 

• Aging epigenetics: changes and challenges. Book chapter in Epigenetics of Aging and Longevity, Elsevier. 2018

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• Chromatin interaction networks revealed unique connectivity patterns of broad H3K4me3 domains and super enhancers in 3D chromatin. Scientific Reports. 2017.

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• Alpha TC1 and Beta-TC-6 genomic profiling uncovers both shared and distinct transcriptional regulatory features with their primary islet counterparts. Scientific Reports. 2017.

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• The chromatin accessibility signature of human immune aging stems from CD8+ T cells. JEM. 2017.

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• Genomics of Islet (Dys)function and Type 2 Diabetes. Trends in Genetics. 2017.

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• Computational inference of a genomic pluripotency signature in human and mouse stem cells. Biology Direct, 2016.

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• Leukemia cell of origin identified by chromatin landscape of bulk tumour cells. 2016. Nature Communications. 2016. 

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• QuIN: A Web Server for Querying and Visualizing Chromatin Interaction Networks. PLOS Computational Biology. 2016. 

 

• The tandem duplicator phenotype as a distinct genomic configuration in cancer. PNAS. 2016. 

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• Computational inference of H3K4me3 and H3K27ac domain length.​ PeerJ. 2016. 

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• Transcriptional Regulation of the Pancreatic Islet: Implications for Islet Function. Current Diabetes Report. 2015. 

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• Cell-specific gene promoters are marked by broader spans of H3K4me3 and are associated with robust gene expression patterns. Epigenomics. 2015. 

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• Broad H3K4me3 domains promote transcriptional stability at key cell identity and function genes. Cell. 2014.

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• FOXO3 shares common targets with ASCL1 genome-wide and inhibits ASCL1-dependent neurogenesis. Cell Reports. 2013.

 

• Expansion of oligodendrocyte progenitor cells following SIRT1 inactivation in the adult brain. Nature Cell Biology. 2013. 

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• Discovering Regulatory DNA Elements Using Chromatin Signatures and Artificial Neural Network. Bioinformatics. 2010. 

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• Combinatorial chromatin modification patterns in the human genome revealed by subspace clustering. Nucleic Acids Research. 2011. 

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• Predicting functionality of protein-DNA interactions by integrating diverse evidence. Bioinformatics. 2009. 

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• Construction of a Reference Gene Association Network from Multiple Profiling Data: Application to HIV Data Analysis. Bioinformatics. 2009. 

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